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build(deps): bump the pre-commit group with 5 updates #790

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Merged
flying-sheep merged 3 commits into from
Nov 12, 2026
Merged

build(deps): bump the pre-commit group with 5 updates #790

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e45840c
build(deps): bump the pre-commit group with 5 updates
dependabot[bot] Nov 12, 2026
1b75882
[autofix.ci] apply automated fixes
autofix-ci[bot] Nov 12, 2026
2724589
Disable biome Markdown formatting (handled by panache)
flying-sheep Nov 12, 2026
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10 changes: 5 additions & 5 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,16 +7,16 @@ default_stages:
minimum_pre_commit_version: 2.16.0
repos:
- repo: https://github.com/biomejs/pre-commit
rev: v2.5.3
rev: v2.6.5
hooks:
- id: biome-format
exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
- repo: https://github.com/tox-dev/pyproject-fmt
rev: v2.25.3
rev: v2.30.6
hooks:
- id: pyproject-fmt
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.15.21
rev: v0.17.3
hooks:
- id: ruff-check
types_or: [python, pyi, jupyter]
Expand All @@ -38,13 +38,13 @@ repos:
args: [--assume-in-merge]

- repo: https://github.com/zizmorcore/zizmor-pre-commit
rev: v1.24.1
rev: v1.32.0
hooks:
- id: zizmor
args: [--no-progress, --fix]

- repo: https://github.com/pre-commit/mirrors-mypy
rev: v1.20.2
rev: v2.4.1
hooks:
- id: mypy
additional_dependencies: [numpy, types-requests]
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1 change: 1 addition & 0 deletions biome.jsonc
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Expand Up @@ -2,6 +2,7 @@
"$schema": "https://biomejs.dev/schemas/2.2.0/schema.json",
"vcs": { "enabled": true, "clientKind": "git", "useIgnoreFile": true },
"formatter": { "useEditorconfig": true },
"markdown": { "formatter": { "enabled": false } }, // handled by panache
"overrides": [
{
"includes": ["./.vscode/*.json", "**/*.jsonc"],
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9 changes: 6 additions & 3 deletions pyproject.toml
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Expand Up @@ -19,6 +19,7 @@ classifiers = [
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Programming Language :: Python :: 3.14",
"Programming Language :: Python :: 3.15",
]
dynamic = [
"version", # allow version to be set by git tags
Expand Down Expand Up @@ -103,7 +104,9 @@ dependencies.python = ">=3.12"
pypi-dependencies.spatialdata-plot = { path = ".", editable = true }
tasks.format = "ruff format ."
tasks.kernel-install = 'python -m ipykernel install --user --name pixi-dev --display-name "sdata-plot (dev)"'
tasks.kernel-install-interactive = "python -m ipykernel install --user --name sdata-plot-interactive --display-name \"sdata-plot (interactive)\""
tasks.kernel-install-interactive = """\
python -m ipykernel install --user --name sdata-plot-interactive --display-name \"sdata-plot (interactive)\"\
"""
tasks.lab = "jupyter lab"
tasks.lint = "ruff check ."
tasks.pre-commit-install = "pre-commit install"
Expand Down Expand Up @@ -194,12 +197,12 @@ ini_options.filterwarnings = [
]

[tool.coverage]
run.branch = true
run.source = [ "spatialdata_plot" ]
run.omit = [
"**/test_*.py",
]
run.branch = true
run.parallel = true
run.source = [ "spatialdata_plot" ]
paths.source = [
"src/spatialdata_plot",
"*/site-packages/spatialdata_plot",
Expand Down
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